論文

2017

  • Suga M, Akita F, Sugahara M, Kubo M, Nakajima Y, Nakane T, Yamashita K, Umena Y, Nakabayashi M, Yamane T, Nakano T, Suzuki M, Masuda T, Inoue S, Kimura T, Nomura T, Yonekura S, Yu LJ, Sakamoto T, Motomura T, Chen JH, Kato Y, Noguchi T, Tono K, Joti Y, Kameshima T, Hatsui T, Nango E, Tanaka R, Naitow H, Matsuura Y, Yamashita A, Yamamoto M, Nureki O, Yabashi M, Ishikawa T, Iwata S & Shen JR.
    Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL
    Nature (2017) Published online
    doi:10.1038/nature21400
  • Hasegawa K, Yamashita K, Murai T, Nuemket N, Hirata K, Ueno G, Ago H, Nakatsu T, Kumasaka T. and Yamamoto M.
    Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography
    J. Synchrotron Rad. (2017). 24
    doi: https://doi.org/10.1107/S1600577516016362

2016


  • Nango E, Royant A, Kubo M, Nakane T, Wickstrand C, Kimura T, Tanaka T, Tono K, Song C, Tanaka R, Arima T, Yamashita A, Kobayashi J, Hosaka T, Mizohata E, Nogly P, Sugahara M, Nam D, Nomura T, Shimamura T, Im D, Fujiwara T, Yamanaka Y, Jeon B, Nishizawa T, Oda K, Fukuda M, Andersson R, Båth P, Dods R, Davidsson J, Matsuoka S, Kawatake S, Murata M, Nureki O, Owada S, Kameshima T, Hatsui T, Joti Y, Schertler G, Yabashi M, Bondar AN, Standfuss J, Neutze R, and Iwata S.
    A three-dimensional movie of structural changes in bacteriorhodopsin.
    Science. 354(6319);1552-1557(2016)
    doi: 10.1126/science.aah3497.
  • Kasuya G, Hiraizumi M, Maturana AD, Kumazaki K, Fujiwara Y, Liu K, Nakada-Nakura Y, Iwata S, Tsukada K, Komori T, Uemura S, Goto Y, Nakane T, Takemoto M, Kato HE, Yamashita K, Wada M, Ito K, Ishitani R, Hattori M, and Nureki O.
    Crystal structures of the TRIC trimeric intracellular cation channel orthologues
    Cell Res. 26(12); 1288-1301(2016)
    doi: 10.1038/cr.2016.140.  
  • Nakane T, Hanashima S, Suzuki M, Saiki H, Hayashi T, Kakinouchi K, Sugiyama S, Kawatake S, Matsuoka S, Matsumori N, Nango E, Kobayashi J, Shimamura T, Kimura K, Mori C, Kunishima N, Sugahara M, Takakyu Y, Inoue S, Masuda T, Hosaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Inoue T, Nureki O , Iwata S, Murata M, and Mizohata E.
    Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
    PNAS. 113(46); 13039-13044 (2016)
    doi: 10.1073/pnas.1602531113 
  • Edlund P, Takala H, Claesson E, Henry L, Dods R, Lehtivuori H, Panman M, Pande K, White T, Nakane T, Berntsson O, Gustavsson E, Båth P, Modi V, Roy-Chowdhury S, Zook J, Berntsen P, Pandey S, Poudyal I, Tenboer J, Kupitz C, Barty A, Fromme P, Koralek JD, Tanaka T, Spence J, Liang M, Hunter MS, Boutet S, Nango E, Moffat K, Groenhof G, Ihalainen J, Stojković EA, Schmidt M and Westenhoff S..
    The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.
    Sci Rep.(19) 6: 35279 (2016)
    doi: 10.1038/srep35279. 
  • Nogly P, Panneels V, Nelson G, Gati C, Kimura T, Milne C, Milathianaki D, Kubo M, Wu W, Conrad C, Coe J, Bean R, Zhao Y, Båth P, Dods R, Harimoorthy R, Beyerlein KR, Rheinberger J, James D, DePonte D, Li C, Sala L, Williams GJ, Hunter MS, Koglin JE, Berntsen P,Nango E, Iwata S, Chapman HN, Fromme P, Frank M, Abela R, Boutet S, Barty A, White TA, Weierstall U, Spence J, Neutze R,Schertler G and Standfuss J.
    Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography
    Nat. Commun.7, 12314 (2016)
    doi:10.1038/ncomms12314 
  • Nishima W, Mizukami W, Tanaka Y, Ishitani R, Nureki O and SugitaY.
    Mechanisms for Two-Step Proton Transfer Reactions in the Outward-Facing Form of MATE Transporter.
    Biophys J. 110(6),1346-1354 (2016)
    doi: 10.1016/j.bpj.2016.01.027. 
  • Kabe Y, Nakane T, Koike I, Yamamoto T, Sugiura Y, Harada E, Sugase K, Shimamura T, Ohmura M, Muraoka K, Yamamoto A, Uchida T, Iwata S, Yamaguchi Y, Krayukhina E, Noda M, Handa H, Ishimori K, Uchiyama S, Kobayashi T and Suematsu M.
    Haem-dependent dimerization of PGRMC1/Sigma-2 receptor facilitates cancer proliferation and chemoresistance.
    Nature Commun.7,11030(2016)
    doi:10.1038/ncomms11030 
  • Fujii Y, Matsunaga Y, Arimori T, Kitago Y, Ogasawara S, Kaneko MK, Kato Y, Takagi J.
    Tailored placement of a turn-forming PA tag into the structured domain of a protein to probe its conformational state.
    J Cell Sci. 129(7),1512-1522(2016)
    doi: 10.1242/jcs.176685.  
  • Nishikawa Y, Inatomi M, Iwasaki H and Kurisu G..
    Structural Change in the Dynein Stalk Region Associated with Two Different Affinities for the Microtubule.
    J Mol Biol. 428(9 Pt B),1886-1896(2016)
    doi: 10.1016/j.jmb.2015.11.008. 
  • Morita J, Kano K, Kato K, Takita H, Skagami H, Yamamoto Y, Mihara E, Ueda H, Sato T, Tokuyama H, Arai H, Asou H, Takagi J, Ishitani R, Nishimasu H, Nureki O, and Aoki J.
    Structural and biological function of ENPP6, a choline-specific glycerophosphodiester-phosphodiesterase.
    Scientific Rep. 6,20995(2016)
    doi:10.1038/srep20995 
  • Nakane T, Joti Y, Tono K, Yabashi M, Nango E, Iwata S, Ishitania R. and Nureki O.
    Data processing pipeline for serial femtosecond crystallography at SACLA
    J. Appl. Cryst. 49(3); 1035-1041(2016)
    doi: 10.1107/S1600576716005720 
  • Sugahara M, Song C, Suzuki M, Masuda T, Inoue S, Nakane T, Yumoto F, Nango E, Tanaka R, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Nureki O, Numata K and Iwata S.
    Oil-free hyaluronic acid matrix for serial femtosecond crystallography
    Scientific Reports 6; 24484 (2016)
    doi: 10.1038/srep24484 
  • White TA, Mariani V, Brehm W, Yefanov O, Barty A, Beyerlein KR, Chervinskii F, Galli L, Gati C, Nakane T, Tolstikova A, Yamashita K, Yoon CH, Diederichs K and Chapman HN.
    Recent developments in CrystFEL.
    J. Appl. Cryst. 49; 680-689 (2016)
    doi:10.1107/S1600576716004751 
  • Mafuné F, Miyajima K, Tono K, Takeda Y, Kohno J, Miyauchi N, Kobayashi J, Joti Y, Nango E, Iwata S and Yabashi M.
    Microcrystals delivery by pulsed liquid droplet for serial femtosecond crystallography
    Acta Cryst. D72; 520-523 (2016)
    doi: 10.1107/S2059798316001480 
  • Fukuda Y, Tse KM, Nakane T, Nakatsu T, Suzuki M, Sugahara M,Inoue S, Masuda T, Yumoto F, Matsugaki N, Nango E, Tono K, Joti Y, Kameshima T, Song C, Hatsui T, Yabashi M, Nureki O, Murphy ME, Inoue T, Iwata S, and Mizohata E.
    Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
    PNAS 113(11); 2928-2933 (2016)
    doi:10.1073/pnas.1517770113 
  • Colletier JP, Sliwa M, Gallat FX, Sugahara M, Guillon V, Schirò G, Coquelle N, Woodhouse J, Roux L, Gotthard G, Royant A, Uriarte LM,Ruckebusch C, Joti Y, Byrdin M, Mizohata E, Nanga E, Tanaka T, Tono K, Yabashi M, Adam V, Cammarata M, Schlichting I, Bourgeois D and Weik M.
    Serial Femtosecond Crystallography and Ultrafast Absorption Spectroscopy of the Photoswitchable Fluorescent Protein IrisFP.
    J Phys Chem Lett.7(5); 882-887 (2016)
    doi: 10.1021/acs.jpclett.5b02789 
  • Nam D, Kim C, Kim Y, Ebisu T, Gallagher-Jones M, Park J, Kim S, Kim S, Tono K and Noh do Y.
    Fixed target single-shot imaging of nanostructures using thin solid membranes at SACLA
    Journal of Physics B. 49(3); 34008-34012 (2016)
    doi:10.1088/0953-4075/49/3/034008 
  • Fukuda, Y., Tse, KM., Suzuki, M., Diederichs, K., Hirata, T., Nakane, T., Sugahara, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Song, C., Hatsui, T., Yabashi, M., Nureki, O., Matsumura, H., Inoue, T., Iwata, S. and Mizohata, E.
    Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
    J. Biochem.195(5); 527-538 (2016)
    doi: 10.1093/jb/mvv133

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2015

  • Kato E.H, Kamiya M, Sugo S, Ito J, Taniguchi R, Orito A, Hirata K, Inutsuka A, Yamanaka A, Maturana AD, Ishitani R, Sudo Y, Hayashi S and Nureki O.
    Atomistic design of microbial opsin-based blue-shifted optogenetics tools.
    Nature Commun.6:7177 (2015)
    doi: 10.1038/ncomms8177.
  • Inaguma A, Tsukamoto H, Kato E.H, Kimura T, Ishizuka T, Oishi S, Yawo H, Nureki O and Furutani Y.
    Chimeras of channelrhodopsin-1 and -2 from Chlamydomonas reinhardtii exhibit distinctive light-induced structural changes from channelrhodopsin-2.
    J Biol Chem. 290(18),11623-11634 (2015)
    doi: 10.1074/jbc.M115.642256.
  • Nomura N, Verdon G, Kang HJ, Shimamura T, Nomura Y, Sonoda Y, Hussien SA, Qureshi AA, Coincon M, Sato Y, Abe H, Nakada-Nakura Y, Hino T, Arakawa T, Kusano-Arai O, Iwanari H, Murata T, Kobayashi T, Hamakubo T, Kasahara M, Iwata S and Drew D.
    Structure and mechanism of the mammalian fructose transporter GLUT5.
    Nature 526(7573), 397-401(2015)
    doi: 10.1038/nature14909.
  • Kharitidi D, Apaja PM, Manteghi S, Suzuki K, Malitskaya E, Roldan A, Gingras MC, Takagi J, Lukacs GL and Pause A.
    Interplay of Endosomal pH and Ligand Occupancy in Integrin IntegUbiquitination, Endocytic Sorting, and Cell Migration.
    Cell Rep.13(3),599-609(2015)
    doi: 10.1016/j.celrep.2015.09.024.
  • Mutoh R, Muraki N, Shinmura K, Kubota-Kawai H, Lee YH, Nowaczyk MM, Rögner M, Hase T, Ikegami T and Kurisu G.
    X-ray Structure and Nuclear Magnetic Resonance Analysis of the Interaction Sites of the Ga-Substituted Cyanobacterial Ferredoxin.
    Biochemistry 54(39),6052-6061(2015)
    doi: 10.1021/acs.biochem.5b00601.
  • Mihara E, Hirai H, Yamamoto H, Tamura-Kawakami K, Matano M, Kikuchi A, Sato T and Takagi J.
    Active and water-soluble form of lipidated Wnt protein is maintained by a serum glycoprotein afamin.
    eLife 5,e11621(2015)
    doi: http://dx.doi.org/10.7554/eLife.11621
  • Nakane,T., Song, C., Suzuki, M., Nango, E., Kobayashi, J., Masuda, T., Inoue, S., Mizohata, E., Nakatsu, T., Tanaka, T., Tanaka, R., Shimamura, T., Tono, K., Joti, Y., Kameshima, T., Hatsui, T., Yabashi, M., Nureki, O., Iwata, S. and Sugahara, M.
    Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
    Acta Cryst. D71(Pt12); 2519-2525 (2015)
    doi:10.1107/S139900471501857X
  • Yamashita, K., Pan, D., Okuda, T., Sugahara, M., Kodan, A., Yamaguchi, T., Murai, T., Gomi, K., Kajiyama, N., Mizohata, E., Suzuki, M., Nango, E., Tono, K., Joti, Y., Kameshima, T., Park, J., Song, C., Hatsui, T., Yabashi, M., Iwata, S., Kato, H., Ago, H., Yamamoto, M. and Nakatsu, T.
    An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography
    Sci Rep.5 :14017 (2015)
    doi:10.1038/srep14017
  • Sugahara M, Mizohata E, Nango E, Suzuki M, Tanaka T, Masuda T, Tanaka R, Shimamura T, Tanaka Y, Suno C, Ihara K, Pan D, Kakinouchi K, Sugiyama S, Murata M, Inoue T, Tono K, Song C, Park J, Kameshima T, Hatsui T, Joti Y, Yabashi M and Iwata S.
    Grease matrix as a versatile carrier of proteins for serial crystallography
    Nat.Method12(1),61-63(2015)
    doi:10.1038/nmeth.3172
  • Fujiwara Y, Goda N, Tamashiro T, Narita H, Satomura K, Tenno T, Nakagawa A, Oda M, Suzuki M, Sakisaka T, Takai Y and Hiroaki H.
    Crystal structure of afadin PDZ domain-nectin-3 complex shows the structural plasticity of the ligand-binding site.
    Protein Sci.24(3),376-385(2015)
    doi: 10.1002/pro.2628.
  • Nakayama T, Mizohata E, Yamashita T, Nagatoishi S, Nakakido M, Iwanari H, Mochizuki Y, Kado Y, Yokota Y, Satoh R, Tsumoto K, Fujitani H, Kodama T, Hamakubo T and Inoue T.
    Structural features of interfacial tyrosine residue in ROBO1 fibronectin domain-antibody complex: Crystallographic, thermodynamic, and molecular dynamic analyses.
    Protein Sci.24(3),328-340(2015)
    doi: 10.1002/pro.2619.
  • Hatsui T and Graafsma H.
    X-ray imaging detectors for synchrotron and XFEL sources
    IUCrJ 2(3),371-383(2015)
    doi: 10.1107/S205225251500010X
  • Kim KH, Kim JG, Nozawa S, Sato T, Oang KY, Kim TW, Ki H, Jo J, Park S, Song C, Sato T, Ogawa K, Togashi T, Tono K, Yabashi M, Ishikawa T, Kim J, Ryoo R, Kim J, Ihee H and Adachi S.
    Direct observation of gold-gold bond formation in solution with femtosecond X-ray scattering
    Nature 518(7539),385-389(2015)
    doi: 10.1038/nature14163
  • Tanabe H, Motoyama K, Ikeda M, Wakiyama M, Terada T, Ohsawa N, Hosaka T, Hato M, Fujii Y, Nakamura Y, Ogasawara S, Hino T, Murata T, Iwata S, Okada-Iwabu M, Iwabu M, Hirata K, Kawano Y, Yamamoto M, Kimura-Someya T, Shirouzu M, Yamauchi T, Kadowaki T and Yokoyama S.
    Expression, purification, crystallization, and preliminary X-ray crystallographic studies of the human adiponectin receptors,AdipoR1 and AdipoR2.
    J Struct Funct Genomics.16(1),11-23(2015)
    doi: 10.1007/s10969-014-9192-z.
  • Tono K, Nango E, Sugahara M, Song C, Park J, Tanaka T, Tanaka R, Joti Y, Kameshima T, Ono S, Hatsui T, Mizohata E, Suzuki M, Shimamura T, Tanaka Y, Iwata S and Yabashi M.
    Diverse application platform for hard X-ray diffraction in SACLA(DAPHNIS): application to serial protein crystallography using an X-ray free-electron laser.
    J Synchrotron Radiat.1;22(Pt3),532-537(2015)
    doi: 10.1107/S1600577515004464.
  • Kitago Y, Nagae M, Nakata Z, Yagi-Utsumi M, Takagi-Niidome S, Mihara E, Nogi T, Kato K and Takagi J.
    Structural basis for amyloidogenic peptide recognition by sorLA
    Nat.Struct.Mol.22,199–206(2015)
    doi: 10.1038/nsmb.2954
  • Lee Y, Nishizawa T, Yamashita K, Ishitani R and Nureki O.
    Structural basis for the facilitative diffusion mechanism by SemiSWEET transporter
    Nat.Commun.6,6112(2015)
    doi: 10.1038/ncomms7112
  • Fukuda M, Takeda H, Kato HE, Doki S, Ito K, Maturana AD, Ishitani R and Nureki O.
    Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK.
    Nat.Commun.6,7097(2015)
    doi: 10.1038/ncomms8097.
  • Kato HE, Inoue K, Abe-Yoshizumi R, Kato Y, Ono H, Konno M, Hososhima S, Ishizuka T, Hoque MR, Kunitomo , Ito J, Yoshizawa S, Yamashita K Takemoto M, Nishizawa T, Taniguchi R, Kogure K, Maturana AD, Iino Y, Yawo H, Ishitani R, Kandori H and Nureki O.
    Structural basis for Na+ transport mechanism by a light-driven Na+ pump
    Nature 521(7550),48-53(2015)
    doi: 10.1038/nature14322

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2014

  • Nishikawa Y, Oyama T, Kamiya N, Kon T, Toyoshima YY, Nakamura H and Kurisu G.
    Structure of the entire stalk region of the Dynein motor domain.
    J Mol Biol. 426(19),3232-3245(2014)
    doi: 10.1016/j.jmb.2014.06.023.
  • Kim C, Kim Y-H, Song C, Kim S-S, Kim S-N, Kang HC, Hwu Y, Tsuei K-D, Liang K and Noh D.
    Resolution enhancement in coherent x-ray diffraction imaging by overcoming instrumental noise
    Optics Express 22(23),29161-29169(2014)
    doi: 10.1364/OE.22.029161
  • Takagi J and Tate CG.
    New constructs and expression of proteins: Making things better.
    Curr Opin Struct Biol.26,ⅳ−ⅵ(2014)
    doi: 10.1016/j.sbi.2014.05.001.
  • Nishikawa Y, Oyama T, Kamiya N, Kon T, Toyoshima YY, Nakamura H and Kurisu G.
    Structure of the entire stalk region of the Dynein motor domain.
    J Mol Biol. 426(19),3232-3245(2014)
    doi: 10.1016/j.jmb.2014.06.023.
  • Furuta T, Yamaguchi T, Kato H and Sakurai M.
    Analysis of the structural and functional roles of coupling helices in the ATP-binding cassette transporter MsbA through enzyme assays and molecular dynamics simulations.
    Biochemistry 53(26),4261–4272(2014)
    doi: 10.1021/bi500255j.
  • Suharni, Nomura Y, Arakawa T, Hino T, Abe H, Nakada-Nakura Y, Sato Y, Iwanari H, Shiroishi M, Asada H, Shimamura T, Murata T, Kobayashi T, Hamakubo T, Iwata S and Nomura N.
    Proteoliposome-based Selection of a Recombinant Antibody Fragment Against the Human M2 Muscarinic Acetylcholine Receptor.
    Monoclon Antib Immunodiagn Immunother 33(6),378-385(2014)
    doi: 10.1089/mab.2014.0041.
  • Kodan A, Yamaguchi T, Nakatsu T, Sakiyama K, Hipolito CJ, Fujioka A, Hirokane R, Ikeguchi K, Watanabe B, Hiratake J, Kimura Y, Suga H, Ueda K and Kato H.
    Structural basis for gating mechanisms of a eukaryotic P-glycoprotein homolog
    PNAS,111(11),4049-4054(2014)
    doi: 10.1073/pnas.1321562111
  • Kudo T, Kobayashi K, Ono S, Watanabe T, Kinoshita H, Okihara M and Hatsui T.
    Development of Experimental Methodology for Highly Efficient Wafer-Level Evaluation of X-Ray Radiation Effects on Semiconductor Devices
    IEEE Trans.Nucl.Sci. 61(3),1444-1450(2014)
    doi:10.1109/TNS.2014.2321766
  • Song C, Tono K, Park J, Ebisu T, Kim S, Shimada H, Kim S, Gallagher-Jones M, Nam D, Sato T, Togashi T, Joti Y, Kameshima T, Hatsui T, Iwata S, Yabashi M and Ishikawa T.
    Multiple Application X-ray Imaging Chamber for Single-shot Diffraction Experiments with Femtosecond X-ray Laser Pulses
    J.Appl.Cryst.47,188-197(2014)
    doi:10.1107/S1600576713029944 
  • Gallat FX, Matsugaki N, Coussens NP, Yagi KJ, Boudes M, Higashi T, Tsuji D, Tatano Y, Suzuki M, Mizohata E, Tono K, Joti Y, Kameshima T, Park J, Song C, Hatsui T, Yabashi M, Nango E, Itoh K, Coulibaly F, Tobe S, Ramaswamy S, Stay B, Iwata S and Chavas LM.
    In vivo crystallography at X-ray free-electron lasers: the next generation of structural biology?
    Phil.Trans.R.Soc.B.369(1647),20130497(2014)
    doi: 10.1098/rstb.2013.0497. PMID:24914164
  • Kumazaki K, Tsukazaki T, Nishizawa T, Tanaka Y, Kato HE, Nakada-Nakura Y, Hirata K, Mori Y, Suga H, Dohmae N, Ishitani R, Nureki O.
    Crystallization and preliminary X-ray diffraction analysis of YidC, a membrane-protein chaperone and insertase from Bacillus halodurans.
    Acta Crystallogr F Struct Biol Commun.1;70(Pt 8):1056-60(2014)
    doi: 10.1107/S2053230X14012540.
  • C. Song, M. Takagi, J. Park, R. Xu, M. Gallagher-Jones, N. Imamoto, and T. Ishikawa
    Analytic 3D imaging of mammalian nucleus at nanoscale using coherent x-rays and optical fluorescence microscopy
    Biophys.J .,107(5):1074-1081(2014)
    doi:10.1016/j.bpj.2014.07.028
  • Gallagher-Jones M, Bessho Y, Kim S-N, Park J, Kim S-S, Nam D, Kim C, Kim Y-H, Noh D-Y, Miyashita O, Tama F, Joti Y, Kameshima T, Hatsui T, Tono K, Kohmura Y, Yabashi M, Hasnain S, Ishikawa T and Song C.
    Macromolecular structures probed by combining single-shot free-electron laser diffraction with synchrotron coherent x-ray imaging
    Nat.Commun.5,3798(2014)
    doi:10.1038/ncomms4798
  • Kojima R, Okumura M, Masui S, Kanemura S, Inoue M, Saiki M, Yamaguchi H, Hikima T, Suzuki M, Akiyama S and Inaba K.
    Radically Different Thioredoxin Domain Arrangement of ERp46, an Efficient Disulfide Bond Introducer of the Mammalian PDI Family
    Structure,22(3),431-433(2014)
    doi: 10.1016/j.str.2013.12.013. PMID:24462249
  • Kimura T, Joti Y, Shibuya A, Song C, Kim S, Tono K, Yabashi M, Tamakoshi M, Moriya T, Oshima T, Ishikawa T, Bessho Y and Nishino Y.
    Imaging live cell in micro-liquid enclosure by X-ray laser diffraction
    Nat.Commun.5,3052(2014)
    doi:10.1038/ncomms4052
  • Xu R, Jiang H, Song C, Rodriguez J.A., Huang Z, Chen C.-C., Nam D, Park J, Gallagher-Jones M, Kim S.-S., Kim S.-N., Suzuki A, Takayama Y, Oroguchi T, Takahashi Y, Fan J, Zou Y, Hatsui T, Inubushi Y, Kameshima T, Yonekura K, Tono K, Togashi T, Sato T, Yamamoto M, Nakasako M, Yabashi M, Ishikawa T and Miao J.
    Single-shot 3D structure determination of nanocrystals with femtosecond X-ray free electron laser pulses
    Nat.Commun.5,4061(2014)
    doi: 10.1038/ncomms5061
  • Morita J, Kato K, Mihara E, Ishitani R, Takagi J, Nishimasu H, Aoki J and Nureki O.
    Expression, purification, crystallization and preliminary X-ray crystallographic analysis of Enpp6
    Acta.Cryst.F70(Pt6),794-799(2014)
    doi: 10.1107/S2053230X14008929. PMID:24915096
  • Kameshima T, Ono S, Kudo T, Ozaki K, Kirihara Y, Kobayashi K, Inubushi Y, Yabashi M, Horigome T, Holland A, Holland K, Burt D, Murao H and Hatsui T.
    Development of an X-ray Pixel Detector with Multiport Charge-Coupled Device for X-ray Free-Electron Laser Experiments
    Rev.Sci.Instrm.85,033110(2014)
    doi:http://dx.doi.org/10.1063/1.4867668
  • Fujii Y, Kaneko M, Neyazaki M, Nogi T, Kato Y and Takagi J.
    PA tag: a versatile protein tagging system using a super high affinity antibody against a dodecapeptide derived from human podoplanin
    Protein Exp.Purif.95,240-247(2014)
    doi: 10.1016/j.pep.2014.01.009 PMID:24480187
  • Caglayan S, Takagi-Niidome S, Liao F, Carlo A-S, Schmidt V, Burgert T, Kitago Y, Füchtbauer E-M, Füchtbauer A, Holtzman DM, Takagi J, and Wilnow TE.
    Lysosomal sorting of amyloid-b by the SORLA receptor is impaired by a familial Alzheimer’s disease mutation
    Science Transl.Med.6,223ra20(2014)
    doi: 10.1126/scitranslmed.3007747
  • Takeshita K, Sakata S, Yamashita E, Fujiwara Y, Kawanabe A, Kurokawa T, Okochi Y, Matsuda M, Narita H, Okamura Y and Nakagawa A.
    X-ray crystal structure of voltage-gated proton channel
    Nat.Struct.Mol.Biol.21,352-357(2014)
    doi:10.1038/nsmb.2783
  • Takeda H, Hattori M, Nishizawa T, Yamashita K, Shah S.T.A., Caffrey M, Maturana A.D., Ishitani R and Nureki O. 
    Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg2+ channel MgtE
    Nat.Commun.5,5374(2014)
    doi:10.1038/ncomms6374 
  • Suzuki H, Nishizawa T, Tani K, Yamazaki Y, Tamura A, Ishitani R, Dohmae N, Tsukita S, Nureki O and Fujiyoshi Y.
    Crystal structure of a claudin provides insight into the architecture of tight junctions
    Science 344(6181),304-307(2014)
    doi: 10.1126/science.1248571
  • Kumazaki K, Chiba S, Takemoto M, Furukawa A, Nishiyama K, Sugano Y, Mori T, Dohmae N, Hirata K, Nakada-Nakura Y, Maturana A.D., Tanaka Y, Mori H, Sugita Y, Arisaka F, Ito K, Ishitani R, Tsukazaki T and Nureki O. 
    Structural basis for Sec-independent membrane protein insertion by YidC
    Nature 509,516-520(2014) 
    doi:10.1038/nature13167
  • Kumazaki K, Kishimoto T, Furukawa A, Mori H, Tanaka Y, Dohmae N, Ishitani R, Tsukazaki T and Nureki O.
    Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase Sci.Rep.4,7299(2014)
    doi:10.1038/srep07299

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2013

  • Nam D, Park J, Gallagher-Jones M, Kim S, Kim S-N, Kohmura Y, Naitow H, Kunishima N, Yoshida T, Ishikawa T and Song C.
    Imaging fully hydrated whole cells by coherent x-ray diffraction microscopy
    Phys.Rev.Lett.110(9),098103 (2013)
    doi: 10.1103/PhysRevLett.110.098103
  • Tanaka Y, Hipolito C.J., Maturana A.D., Ito K, Kuroda T, Higuchi T, Katoh T, Kato H.E., Hattori M, Kumazaki K, Tsukazaki T, Ishitani R, Suga H and Nureki O.
    Structural basis for the novel mechanism of drug extrusion by a MATE multidrug transporter
    Nature 496,247–251(2013)
    doi:10.1038/nature12014
  • Maruyama T, Imai S, Osawa M, Hattori M, Ishitani R, Nureki O and Shimada I.
    Backbone resonance assignments for the cytoplasmic region of the Mg(2+) transporter MgtE in the Mg (2+)-unbound state
    Biomol.NMR Assign.7,93-96(2013)
    doi: 10.1007/s12104-012-9385-y PMID:22477092
  • Yamamoto K, Higashiura A, Suzuki M, Aritake K, Urade Y, Udome N and Nakagawa A.
    Crystal structure of a Bombyx mori Sigma-1 class glutathione transferase exhibiting prostaglandin E synthase activity
    Biochim Biophys Acta.1830(6),3711-3718(2013)
    doi: 10.1016/j.bbagen.2013.02.021. PMID:23458683
  • Mizohata E, Okuda T, Hatanaka S, Nakayama T, Horikawa M, Nakayama T, Ono E and Inoue T.
    Crystallization and preliminary X-ray crystallographic analysis of UDP-glucuronic acid:flavonol-3-O-glucuronosyltransferase (VvGT5) from the grapevine Vitis vinifera
    Acta Cryst.F69,65-68(2013)
    doi: 10.1107/S1744309112045095. PMID:23295490
  • Nam D, Park J, Gallagher-Jones M, Shimada H, Kim S—S, Kim S-N, Kohmura Y, Ishikawa T and Song C.
    Development of an adaptable coherent x-ray diffraction microscope with the emphasis on imaging hydrated specimens
    Rev.Sci.Instrm.84,113702(2013)
    doi: 10.1063/1.4828656 PMID:24289399
  • Sato Y, Kojima R, Okumura M, Hagiwara M, Masui S, Maegawa K, Saiki M, Horibe T, Suzuki M and Inaba K.
    Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding
    Scientific Reports 3,2456(2013)
    doi:10.1038/srep02456
  • Nishizawa T, Kita S, Maturana A.D., Furuya N, Hirata K, Kasuya G, Ogasawara S, Dohmae N, Iwamoto T, Ishitani R and Nureki O.
    Structural basis for the counter-transport mechanism of a H+/Ca2+ exchanger
    Science 341(1642),168-172(2013)
    doi: 10.1126/science.1239002. PMID:23704374
  • Doki S, E-Kato H, Solcan N, Iwaki M, Koyama M, Iwase N, Tsukazaki T, Sugita Y, Kandori H, Newstead S, Ishitani R and Nureki O.
    Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT
    PNAS.110(28),11343-11348(2013)
    doi: 10.1073/pnas.1301079110
  • Oohora K, Kihira Y, Mizohata E, Inoue T and Hayashi T.
    C(sp3)-H Bond Hydroxylation Catalyzed by Myoglobin Reconstituted with Manganese Porphycene
    J.Am.Chem.Soc.135(46),17282-17285(2013)
    doi: 10.1021/ja409404k PMID:24191678
  • Hirose M, Sugiyama S, Ishida H, Niiyama M, Matsuoka D, Hara T, Mizohata E, Murakami S, Inoue T, Matsuoka S and Murata M.
    Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid
    J.Synchrotron Radiat.20,923-928(2013)
    doi: 10.1107/S0909049513021298 PMID:24121341
  • Akiyama M, Nakayama D, Takeda S, Kokame K, Takagi J and Miyata T.
    Crystal structure and enzymatic activity of an ADAMTS13 mutant with the East Asian-specific P475S polymorphism
    J.Thromb Haemost.11,1399-1406(2013)
    doi: 10.1111/jth.12279. PMID:23621748
  • Sangawa T, Tabata S, Suzuki K, Saheki Y, Tanaka K, and Takagi J.
    A multi-purpose fusion tag derived from an unstructured and hyper-acidic region of the amyloid precursor protein
    Protein Sci.22,840-850(2013)
    doi: 10.1002/pro.2254. PMID:23526492
  • Park J, Joti Y, Ishikawa T and Song C.
    Monte Carlo study for optimal conditions in single-shot imaging with femtosecond x-ray laser pulses
    App.Phys.Lett.103,264101(2013)
    doi:http://dx.doi.org/10.1063/1.4855635
  • Kimata-Ariga Y, Kubota-Kawai H, Lee YH, Muraki N, Ikegami T, Kurisu G and Hase T. Concentration-dependent oligomerization of cross-linked complexes between ferredoxin and ferredoxin-NADP+ reductase
    Biochem Biophys Res Commun.434(4),867-872(2013)
    doi: 10.1016/j.bbrc.2013.04.033. PMID:23618857
  • Casanas A, Querol-Audí J, Guerra P, Pous J, Tanaka H, Tsukihara T, Verdaguer N, Fita I.
    New features of vault architecture and dynamics revealed by novel refinement using the deformable elastic network approach
    Acta Cryst.D69(Pt6),1054-61(2013)
    doi: 10.1107/S0907444913004472. PMID:23695250
  • Hipolito C.J., Tanaka Y, Katoh T, Nureki O and Suga H.
    A macrocyclic peptide that serves as a cocrystallization ligand and inhibits the function of a MATE family transporter
    Molecules 18(9),10514-10530(2013)
    doi:10.3390/molecules180910514
  • Yoshimaru T, Komatsu M, Matsuo T, Chen Y.A., Murakami Y, Mizuguchi K, Mizohata E, Inoue T, Akiyama M, Yamaguchi R, Imoto S, Miyano S, Miyoshi Y, Sasa M, Nakamura Y and Katagiri T.
    Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells
    Nat.Commun.4,2443(2013)
    doi:10.1038/ncomms3443

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2012

  • Kato K, Nishimasu H, Okudaira S, Mihara E, Ishitani R, Takagi J, Aoki J and Nureki O.
    Crystal structure of Enpp1, an extracellular glycoprotein involved in bone mineralization and insulin signaling
    PNAS.109(42),16876-16881(2012)
    doi: 10.1073/pnas.1208017109. PMID:23027977
  • Tanaka H and Tsukihara T.
    Structural studies of large nucleoprotein particles, vaults
    Proc.Jpn.Acad.,Ser.B.88,416-433(2012)
    doi:http://doi.org/10.2183/pjab.88.416 PMID:23060231
  • Takashima Y, Mizohata E, Krungkrai SR, Fukunishi Y, Kinoshita T, Sakata T, Matsumura H, Krungkrai J, Horii T and Inoue T.
    The in silico screening and X-ray structure analysis of the inhibitor complex of Plasmodium falciparum orotidine 5’-monophosphate decarboxylase
    J.Biochem.152(2),133-138(2012)
    doi:10.1093/jb/mvs070 PMID:22740703
  • Park J, Nam D, Kohmura Y, Nagasono M, Jeon Y, Lee J.-B., Ishikawa T and Song C.
    Assessment of Radiation Damage in Single-shot Coherent Diffraction of DNA Molecules by EUV-FEL
    Phys.Rev.E 86(4),042901(2012)
    doi: 10.1103/PhysRevE.86.042901
  • E-Kato H, Zhang F, Yizhar O, Ramakrishnan C, Nishizawa T, K. Hirata, Ito J, Aita Y, Tsukazaki T, Hayashi S, Hegemann P, Maturana A.D., Ishitani R, Deisseroth K and Nureki O.
    Crystal structure of the channelrhodopsin light-gated cation channel
    Nature 482(7385),369-374(2012)
    doi: 10.1038/nature10870. PMID:22266941

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